Hey Daniel,
I'm not using a Template override. Rather I developed a basic one from scratch using this tutorial:
http://www.inmotionhosting.com/support/edu/joomla-3/create-template
As such the only code I have above my opening HTML tag is:
<?php
defined('_JEXEC') or die;
$doc = JFactory::getDocument();
$doc->addStyleSheet($this->baseurl . '/media/jui/css/bootstrap.min.css');
$doc->addStyleSheet($this->baseurl . '/media/jui/css/bootstrap-responsive.css');
$doc->addStyleSheet('templates/' . $this->template . '/css/style.css');
$doc->addScript($this->baseurl . '/media/system/js/mootools-core.js');
$doc->addScript($this->baseurl . '/media/system/js/mootools-more.js');
$doc->addScript('/media/mod_cmc/js/cmc.js');
$doc->addScript('//ajax.googleapis.com/ajax/libs/jquery/1.9.0/jquery.min.js', 'text/javascript');
$doc->addScript('//ajax.googleapis.com/ajax/libs/jqueryui/1.9.2/jquery-ui.min.js', 'text/javascript');
?>
What do I need to add to this to make CMC work? Excuse my ignorance when it comes to Joomla templates. Thanks.